Singleton Multiqc Report

https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:sentv0.1) (HASH:f902915)

Project/Budget: da-us-west-2d-lsmc-senttests-usw2d
Budget @ Runtime: $214.309 of $200.0 spent ( 107.154%)
Spot Instances: c6i.32xlarge c7i.48xlarge c7i.metal-48xl m6i.metal m7i.48xlarge m7i.metal-48xl r6i.metal r7i.48xlarge
Spot Costs per hr: median: $3.39 mean: $3.09 ( avg cost per vcpu,per min: $0.000267937 )
FQ->BAM.sort avg Costs
BAM mrkdup avg Cost: 0 min, costing $0.00
Results Dir (GB): 24G

JavaScript Disabled

MultiQC reports use JavaScript for plots and toolbox functions. It looks like you have JavaScript disabled in your web browser. Please note that many of the report functions will not work as intended.

Report generated on 2025-04-30, 03:39 UTC based on data in: /fsx/analysis_results/ubuntu/ug/daylily/results/day/hg38

General Statistics

Showing ⁰/₄₃ rows and ²⁷/₃₉ columns.

Sample Name	Contamination (S)	Family ID	Ancestry	P(Ancestry)	Sex / Het Ratio	Correct Sex	Sex	Vars	SNP	Indel	Ts/Tv	MNP	Multiallelic	Multiallelic SNP	M Reads	≥ 1X	≥ 5X	≥ 10X	≥ 30X	≥ 50X	Median	Mean Cov.	Min Cov.	Max Cov.	Mb Total Coverage Bases	Genome length	Vars	SNP	Indel	Ts/Tv	MNP	Multiallelic	Multiallelic SNP	InsertSizeMean	InsertSizeMedian	InsertSizeMode	InsertSizeStandardDeviation	DuplicateReadsPct	ChimericReadPairPct
NA12878	0.077%	NA12878	EUR	0.7	2.3	True	female
NA24143	0.090%	NA24143	UNKNOWN	0.5	3.6	True	female
NA24149	0.066%	NA24149	EUR	0.7	1.0	False	female
NA24385	0.096%	NA24385	EUR	0.7	1.0	False	female
NA24631	0.077%	NA24631	EAS	1.0	0.9	False	female
NA24694	0.098%	NA24694	EAS	1.0	0.8	False	female
NA24695	0.078%	NA24695	EAS	1.0	2.8	True	female
UG1_ANA0-HG001_DBC0_0															2.0M
UG1_ANA0-HG001_DBC0_0.md																91.0%	91.0%	90.0%	89.0%	25.0%	45X	42.0X	0.0X	18,257.0X	134,945.6Mb	3,214,169,320
UG1_ANA0-HG001_DBC0_0.ug.sentdug.snv.sort								7,717,503	4,771,745	2,952,674	1.76	0	92,837	4,291													7,717,503	4,771,745	2,952,674	1.76	0	92,837	4,291
UG1_ANA0-HG001_sent																																		0.0	0.0	0.0	0.0	8.5	100.0
UG1_ANA0-HG002_DBC0_0															2.0M
UG1_ANA0-HG002_DBC0_0.md																91.0%	91.0%	91.0%	84.0%	28.0%	46X	41.9X	0.0X	17,461.0X	134,737.6Mb	3,214,466,364
UG1_ANA0-HG002_DBC0_0.ug.sentdug.snv.sort								7,989,249	4,851,080	3,145,254	1.75	0	92,859	4,017													7,989,249	4,851,080	3,145,254	1.75	0	92,859	4,017
UG1_ANA0-HG002_sent																																		0.0	0.0	0.0	0.0	9.4	100.0
UG1_ANA0-HG003_DBC0_0															2.0M
UG1_ANA0-HG003_DBC0_0.md																91.0%	91.0%	91.0%	85.0%	30.0%	46X	42.6X	0.0X	15,884.0X	136,797.8Mb	3,213,887,380
UG1_ANA0-HG003_DBC0_0.ug.sentdug.snv.sort								7,698,173	4,770,422	2,934,479	1.76	0	92,550	3,948													7,698,173	4,770,422	2,934,479	1.76	0	92,550	3,948
UG1_ANA0-HG003_sent																																		0.0	0.0	0.0	0.0	9.0	100.0
UG1_ANA0-HG004_DBC0_0															2.0M
UG1_ANA0-HG004_DBC0_0.md																91.0%	91.0%	90.0%	89.0%	31.0%	47X	43.2X	0.0X	17,199.0X	139,036.5Mb	3,214,703,487
UG1_ANA0-HG004_DBC0_0.ug.sentdug.snv.sort								7,937,093	4,881,412	3,062,741	1.76	0	95,413	4,395													7,937,093	4,881,412	3,062,741	1.76	0	95,413	4,395
UG1_ANA0-HG004_sent																																		0.0	0.0	0.0	0.0	9.2	100.0
UG1_ANA0-HG005_DBC0_0															2.0M
UG1_ANA0-HG005_DBC0_0.md																91.0%	91.0%	91.0%	85.0%	31.0%	46X	42.6X	0.0X	17,303.0X	137,107.8Mb	3,214,443,108
UG1_ANA0-HG005_DBC0_0.ug.sentdug.snv.sort								7,736,667	4,760,636	2,982,934	1.76	0	93,819	4,013													7,736,667	4,760,636	2,982,934	1.76	0	93,819	4,013
UG1_ANA0-HG005_sent																																		0.0	0.0	0.0	0.0	9.0	100.0
UG1_ANA0-HG006_DBC0_0															2.0M
UG1_ANA0-HG006_DBC0_0.md																91.0%	91.0%	91.0%	84.0%	28.0%	45X	41.7X	0.0X	16,280.0X	133,883.3Mb	3,213,951,547
UG1_ANA0-HG006_DBC0_0.ug.sentdug.snv.sort								7,980,912	4,805,251	3,182,840	1.75	0	93,687	4,141													7,980,912	4,805,251	3,182,840	1.75	0	93,687	4,141
UG1_ANA0-HG006_sent																																		0.0	0.0	0.0	0.0	9.4	100.0
UG1_ANA0-HG007_DBC0_0															2.0M
UG1_ANA0-HG007_DBC0_0.md																91.0%	91.0%	90.0%	89.0%	33.0%	47X	43.9X	0.0X	18,428.0X	141,194.1Mb	3,213,940,170
UG1_ANA0-HG007_DBC0_0.ug.sentdug.snv.sort								7,902,773	4,828,854	3,081,178	1.76	0	96,360	4,574													7,902,773	4,828,854	3,081,178	1.76	0	96,360	4,574
UG1_ANA0-HG007_sent																																		0.0	0.0	0.0	0.0	9.4	100.0
UG1_ANA1-HG004_DBC0_0															2.0M
UG1_ANA1-HG004_DBC0_0.md																91.0%	91.0%	90.0%	88.0%	26.0%	45X	42.2X	0.0X	17,180.0X	135,686.4Mb	3,214,306,839
UG1_ANA1-HG004_DBC0_0.ug.sentdug.snv.sort								7,760,744	4,839,878	2,927,669	1.76	0	93,899	4,391													7,760,744	4,839,878	2,927,669	1.76	0	93,899	4,391
UG1_ANA1-HG004_sent																																		0.0	0.0	0.0	0.0	8.9	100.0
UG1_ANA1-HG005_DBC0_0															2.0M
UG1_ANA1-HG005_DBC0_0.md																91.0%	91.0%	91.0%	85.0%	30.0%	46X	42.5X	0.0X	17,144.0X	136,754.1Mb	3,213,742,294
UG1_ANA1-HG005_DBC0_0.ug.sentdug.snv.sort								7,760,851	4,768,717	2,999,088	1.76	0	93,146	4,028													7,760,851	4,768,717	2,999,088	1.76	0	93,146	4,028
UG1_ANA1-HG005_sent																																		0.0	0.0	0.0	0.0	9.1	100.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	VerifyBAMID	Contamination (S)	VerifyBamID: FREEMIX - Sequence-only estimate of contamination.	`verifybamid-FREEMIX`
\|\|	Peddy	Family ID	Family ID	`peddy-family_id`
\|\|	Peddy	Ancestry	Ancestry Prediction	`peddy-ancestry_prediction`
\|\|	Peddy	P(Ancestry)	Probability predicted ancestry is correct.	`peddy-ancestry_prob_het_check`
\|\|	Peddy	Sex / Het Ratio	Sex / Het Ratio	`peddy-sex_het_ratio`
\|\|	Peddy	Correct Sex	Displays False if error in sample sex prediction	`peddy-error_sex_check`
\|\|	Peddy	Sex	Predicted sex	`peddy-predicted_sex_sex_check`
\|\|	Bcftools: Stats	Vars	Variations total	`bcftools_stats-number_of_records`
\|\|	Bcftools: Stats	SNP	Variation SNPs	`bcftools_stats-number_of_SNPs`
\|\|	Bcftools: Stats	Indel	Variation Insertions/Deletions	`bcftools_stats-number_of_indels`
\|\|	Bcftools: Stats	Ts/Tv	Variant SNP transition / transversion ratio	`bcftools_stats-tstv`
\|\|	Bcftools: Stats	MNP	Variation multinucleotide polymorphisms	`bcftools_stats-number_of_MNPs`
\|\|	Bcftools: Stats	Multiallelic	Variation sites with multiple alleles	`bcftools_stats-number_of_multiallelic_sites`
\|\|	Bcftools: Stats	Multiallelic SNP	Variation sites with multiple SNPs	`bcftools_stats-number_of_multiallelic_SNP_sites`
\|\|	Picard: QualityYieldMetrics	M Reads	The total number of reads in the input file (millions)	`picard_qualityyieldmetrics-TOTAL_READS`	read_count
\|\|	Mosdepth	≥ 1X	Fraction of genome with at least 1X coverage	`mosdepth-1_x_pc`
\|\|	Mosdepth	≥ 5X	Fraction of genome with at least 5X coverage	`mosdepth-5_x_pc`
\|\|	Mosdepth	≥ 10X	Fraction of genome with at least 10X coverage	`mosdepth-10_x_pc`
\|\|	Mosdepth	≥ 30X	Fraction of genome with at least 30X coverage	`mosdepth-30_x_pc`
\|\|	Mosdepth	≥ 50X	Fraction of genome with at least 50X coverage	`mosdepth-50_x_pc`
\|\|	Mosdepth	Median	Median coverage	`mosdepth-median_coverage`
\|\|	Mosdepth	Mean Cov.	Mean coverage	`mosdepth-mean_coverage`
\|\|	Mosdepth	Min Cov.	Minimum coverage	`mosdepth-min_coverage`
\|\|	Mosdepth	Max Cov.	Maximum coverage	`mosdepth-max_coverage`
\|\|	Mosdepth	Mb Total Coverage Bases	Total coverage of bases (millions)	`mosdepth-coverage_bases`	base_count
\|\|	Mosdepth	Genome length	Total length of the genome	`mosdepth-length`
\|\|	Bcftools: Stats	Vars	Variations total	`bcftools_stats-number_of_records-1`
\|\|	Bcftools: Stats	SNP	Variation SNPs	`bcftools_stats-number_of_SNPs-1`
\|\|	Bcftools: Stats	Indel	Variation Insertions/Deletions	`bcftools_stats-number_of_indels-1`
\|\|	Bcftools: Stats	Ts/Tv	Variant SNP transition / transversion ratio	`bcftools_stats-tstv-1`
\|\|	Bcftools: Stats	MNP	Variation multinucleotide polymorphisms	`bcftools_stats-number_of_MNPs-1`
\|\|	Bcftools: Stats	Multiallelic	Variation sites with multiple alleles	`bcftools_stats-number_of_multiallelic_sites-1`
\|\|	Bcftools: Stats	Multiallelic SNP	Variation sites with multiple SNPs	`bcftools_stats-number_of_multiallelic_SNP_sites-1`
\|\|	Custom content: alignstats_gs	InsertSizeMean	InsertSizeMean	`custom_content_alignstats_gs-InsertSizeMean`
\|\|	Custom content: alignstats_gs	InsertSizeMedian	InsertSizeMedian	`custom_content_alignstats_gs-InsertSizeMedian`
\|\|	Custom content: alignstats_gs	InsertSizeMode	InsertSizeMode	`custom_content_alignstats_gs-InsertSizeMode`
\|\|	Custom content: alignstats_gs	InsertSizeStandardDeviation	InsertSizeStandardDeviation	`custom_content_alignstats_gs-InsertSizeStandardDeviation`
\|\|	Custom content: alignstats_gs	DuplicateReadsPct	DuplicateReadsPct	`custom_content_alignstats_gs-DuplicateReadsPct`
\|\|	Custom content: alignstats_gs	ChimericReadPairPct	ChimericReadPairPct	`custom_content_alignstats_gs-ChimericReadPairPct`

VerifyBAMID

Detects sample contamination and/or sample swaps.URL: https://genome.sph.umich.edu/wiki/VerifyBamIDDOI: 10.1016/j.ajhg.2012.09.004

VerifyBamID checks whether reads match known genotypes or are contaminated as a mixture of two samples. A key step in any genetic analysis is to verify whether data being generated matches expectations. verifyBamID checks whether reads in a BAM file match previous genotypes for a specific sample. In addition, it detects possible sample mixture from population allele frequency only, which can be particularly useful when the genotype data is not available. Using a mathematical model that relates observed sequence reads to an hypothetical true genotype, verifyBamID tries to decide whether sequence reads match a particular individual or are more likely to be contaminated (including a small proportion of foreign DNA), derived from a closely related individual, or derived from a completely different individual.

The following values provide estimates of sample contamination. Click help for more information.

Please note that FREEMIX is named Contamination (Seq) and CHIPMIX is named Contamination (S+A) in this MultiQC report.

VerifyBamID provides a series of information that is informative to determine whether the sample is possibly contaminated or swapped, but there is no single criteria that works for every circumstances. There are a few unmodeled factor in the estimation of [SELF-IBD]/[BEST-IBD] and [%MIX], so please note that the MLE estimation may not always exactly match to the true amount of contamination. Here we provide a guideline to flag potentially contaminated/swapped samples:

Each sample or lane can be checked in this way. When [CHIPMIX] >> 0.02 and/or [FREEMIX] >> 0.02, meaning 2% or more of non-reference bases are observed in reference sites, we recommend to examine the data more carefully for the possibility of contamination.
We recommend to check each lane for the possibility of sample swaps. When [CHIPMIX] ~ 1 AND [FREEMIX] ~ 0, then it is possible that the sample is swapped with another sample. When [CHIPMIX] ~ 0 in .bestSM file, [CHIP_ID] might be actually the swapped sample. Otherwise, the swapped sample may not exist in the genotype data you have compared.
When genotype data is not available but allele-frequency-based estimates of [FREEMIX] >= 0.03 and [FREELK1]-[FREELK0] is large, then it is possible that the sample is contaminated with other sample. We recommend to use per-sample data rather than per-lane data for checking this for low coverage data, because the inference will be more confident when there are large number of bases with depth 2 or higher.

Copied from the VerifyBAMID documentation - see the link for more details.

Showing ⁰/₇ rows and ⁷/₁₂ columns.

Sample Name	Read Group	SNPS	M Reads	Average Depth	Contamination (Seq)	FREEELK1	FREELK0	FREE_RH	FREE_RA	DPREF	RDPHET	RDPALT
NA12878	NA	100,000	3.9M	38.7X	0.077%	-1,027,770	-1,034,030	NA	NA	NA	NA	NA
NA24143	NA	100,000	3.9M	39.1X	0.090%	-1,042,160	-1,048,360	NA	NA	NA	NA	NA
NA24149	NA	100,000	4.0M	39.9X	0.066%	-1,047,760	-1,054,160	NA	NA	NA	NA	NA
NA24385	NA	100,000	3.8M	38.2X	0.096%	-1,019,220	-1,022,280	NA	NA	NA	NA	NA
NA24631	NA	100,000	4.0M	39.6X	0.077%	-979,145	-991,601	NA	NA	NA	NA	NA
NA24694	NA	100,000	3.8M	38.1X	0.098%	-953,053	-975,322	NA	NA	NA	NA	NA
NA24695	NA	100,000	3.9M	39.3X	0.078%	-983,328	-1,003,240	NA	NA	NA	NA	NA

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: verifybamid-results_table

Sort	Column	Description	ID	Scale
\|\|	Read Group	ReadGroup ID of sequenced lane.	`verifybamid-RG`
\|\|	SNPS	# SNPs passing the criteria from the VCF file	`verifybamid-SNPS`
\|\|	M Reads	Number of reads loaded from the BAM file (millions)	`verifybamid-READS`	read_count
\|\|	Average Depth	Average sequencing depth at the sites in the VCF file	`verifybamid-AVG_DP`
\|\|	Contamination (Seq)	VerifyBamID: FREEMIX - Sequence-only estimate of contamination.	`verifybamid-FREEMIX`
\|\|	FREEELK1	Maximum log-likelihood of the sequence reads given estimated contamination under sequence-only method	`verifybamid-FREELK1`
\|\|	FREELK0	Log-likelihood of the sequence reads given no contamination under sequence-only method	`verifybamid-FREELK0`
\|\|	FREE_RH	Estimated reference bias parameter Pr(refBase\|HET) (when --free-refBias or --free-full is used)	`verifybamid-FREE_RH`
\|\|	FREE_RA	Estimated reference bias parameter Pr(refBase\|HOMALT) (when --free-refBias or --free-full is used)	`verifybamid-FREE_RA`
\|\|	DPREF	Depth (Coverage) of HomRef site (based on the genotypes of (SELF_SM/BEST_SM), passing mapQ, baseQual, maxDepth thresholds.	`verifybamid-DPREF`
\|\|	RDPHET	DPHET/DPREF, Relative depth to HomRef site at Heterozygous site.	`verifybamid-RDPHET`
\|\|	RDPALT	DPHET/DPREF, Relative depth to HomRef site at HomAlt site.	`verifybamid-RDPALT`

Peddy

Compares familial-relationships and sexes as reported in a PED file with those inferred from a VCF.URL: https://github.com/brentp/peddyDOI: 10.1016/j.ajhg.2017.01.017

It samples the VCF at about 25000 sites (plus chrX) to accurately estimate relatedness, IBS0, heterozygosity, sex and ancestry. It uses 2504 thousand genome samples as backgrounds to calibrate the relatedness calculation and to make ancestry predictions. It does this very quickly by sampling, by using C for computationally intensive parts, and parallelization.

PCA Plot

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Het Check

Proportion of sites that were heterozygous against median depth.

A high proportion of heterozygous sites suggests contamination, a low proportion suggests consanguinity.

See the main peddy documentation for more details about the het_check command.

Created with MultiQC

Sex Check

Predicted sex against heterozygosity ratio

Higher values of Sex Het Ratio suggests the sample is female, low values suggest male.

See the main peddy documentation for more details about the het_check command.

Created with MultiQC

Picard

Tools for manipulating high-throughput sequencing data.URL: http://broadinstitute.github.io/picard

Alignment Summary

Please note that Picard's read counts are divided by two for paired-end data. Total bases (including unaligned) is not provided.

Created with MultiQC

Mean read length

The mean read length of the set of reads examined.

Created with MultiQC

Base Distribution

Plot shows the distribution of bases by cycle.

Created with MultiQC

GC Coverage Bias

This plot shows bias in coverage across regions of the genome with varying GC content. A perfect library would be a flat line at y = 1.

Created with MultiQC

Mean Base Quality by Cycle

Plot shows the mean base quality by cycle.

This metric gives an overall snapshot of sequencing machine performance. For most types of sequencing data, the output is expected to show a slight reduction in overall base quality scores towards the end of each read.

Spikes in quality within reads are not expected and may indicate that technical problems occurred during sequencing.

Created with MultiQC

Base Quality Distribution

Plot shows the count of each base quality score.

Created with MultiQC

Mosdepth

Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.URL: https://github.com/brentp/mosdepthDOI: 10.1093/bioinformatics/btx699

Cumulative coverage distribution

Proportion of bases in the reference genome with, at least, a given depth of coverage. Note that for 9 samples, a BED file was provided, so the data was calculated across those regions. For 9 samples, it's calculated across the entire genome length. 9 samples have both global and region reports, and we are showing the data for regions

For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position, while the breadth of coverage is the fraction of the reference sequence to which reads have been mapped with at least a given depth of coverage (Sims et al. 2014).

Defining coverage breadth in terms of coverage depth is useful, because sequencing experiments typically require a specific minimum depth of coverage over the region of interest (Sims et al. 2014), so the extent of the reference sequence that is amenable to analysis is constrained to lie within regions that have sufficient depth. With inadequate sequencing breadth, it can be difficult to distinguish the absence of a biological feature (such as a gene) from a lack of data (Green 2007).

For increasing coverage depths (1×, 2×, …, N×), coverage breadth is calculated as the percentage of the reference sequence that is covered by at least that number of reads, then plots coverage breadth (y-axis) against coverage depth (x-axis). This plot shows the relationship between sequencing depth and breadth for each read dataset, which can be used to gauge, for example, the likely effect of a minimum depth filter on the fraction of a genome available for analysis.

Created with MultiQC

Average coverage per contig

Average coverage per contig or chromosome

Created with MultiQC

XY coverage

Created with MultiQC

Bcftools

Version:


                      
                        1.21

Utilities for variant calling and manipulating VCFs and BCFs.URL: https://samtools.github.io/bcftoolsDOI: 10.1093/gigascience/giab008

Variant Substitution Types

Created with MultiQC

Variant Quality

Created with MultiQC

Indel Distribution

Created with MultiQC

Variant depths

Read depth support distribution for called variants

Created with MultiQC

Alignstats Data

Alignstats Data.

Showing ⁰/₉ rows and ¹⁶⁶/₁₆₆ columns.

sample	aligner	AlignedBases	AlignedBasesPct	AlignedReadLengthMean	AlignedReadLengthMedian	AlignedReadLengthMode	AlignedReadLengthStandardDeviation	ChimericReadPairPct	DeletedBases	DeletedBasesPct	DuplicateBases	DuplicateBasesPct	DuplicateReads	DuplicateReadsPct	InputFileName	InputFileSize	InsertedBases	InsertedBasesPct	MappedBases	MappedBasesPct	MappedReads	MappedReadsPct	MatchedBases	MatchedBasesPct	MismatchedBases	MismatchedBasesPct	PerfectBases	PerfectBasesPct	PerfectReads	PerfectReadsPct	Q20Bases	Q20BasesPct	SoftClippedBases	SoftClippedBasesPct	SoftClippedReads	SoftClippedReadsPct	TotalRecords	UnfilteredRecords	UnfilteredRecordsPct	UnmappedBases	UnmappedReads	UnmappedReadsPct	WgsAlignedReads	WgsAlignedReadsPct	WgsCalculatedAlignedReads	WgsCovDuplicateReads	WgsCovDuplicateReadsPct	WgsCoverageBases1	WgsCoverageBases10	WgsCoverageBases100	WgsCoverageBases1000	WgsCoverageBases100Pct	WgsCoverageBases10Pct	WgsCoverageBases15	WgsCoverageBases15Pct	WgsCoverageBases1Pct	WgsCoverageBases20	WgsCoverageBases20Pct	WgsCoverageBases30	WgsCoverageBases30Pct	WgsCoverageBases40	WgsCoverageBases40Pct	WgsCoverageBases50	WgsCoverageBases500	WgsCoverageBases50Pct	WgsCoverageBases60	WgsCoverageBases60Pct	WgsCoverageBases70	WgsCoverageBases70Pct	WgsCoverageMean	WgsCoverageMedian	WgsCoverageStandardDeviation	WgsExpectedAlignedReads	WgsTotalReads	YieldBases	YieldReads
UG1_ANA0-HG001_sent	sent	145,639,576,726.0	97.1	276.1	289.0	316.0	57.4	100.0	708,910,292.0	0.5	12,180,487,969.0	8.1	44,814,199.0	8.5	results/day/hg38/UG1_ANA0-HG001/align/sent/UG1_ANA0-HG001.cram	74,347,726,937.0	611,975,816.0	0.4	149,996,871,290.0	100.0	527,469,461.0	99.9	143,480,301,045.0	98.5	1,547,299,865.0	1.1	22,854,029,195.0	15.2	89,601,770.0	17.0	127,927,574,355.0	87.8	4,357,294,564.0	2.9	125,792,145.0	23.8	527,764,228.0	527,764,228.0	100.0	15,785,831.0	294,767.0	0.1	527,469,461.0	99.9	482,655,262.0	44,814,199.0	8.5	2,912,105,930.0	2,886,412,419.0	14,755,998.0	538,203.0	0.5	89.8	2,875,712,541.0	89.5	90.6	2,861,498,087.0	89.0	2,748,758,606.0	85.5	2,138,629,874.0	66.5	957,237,523.0	1,155,771.0	29.8	201,528,092.0	6.3	42,274,179.0	1.3	41.8	44.0	41.9	527,469,461.0	527,764,228.0	150,012,657,121.0	527,764,228.0
UG1_ANA0-HG002_sent	sent	146,411,711,641.0	96.4	279.6	296.0	318.0	60.6	100.0	793,402,853.0	0.5	13,564,774,268.0	8.9	49,006,093.0	9.4	results/day/hg38/UG1_ANA0-HG002/align/sent/UG1_ANA0-HG002.cram	78,970,519,180.0	670,420,067.0	0.5	151,930,302,065.0	100.0	523,737,207.0	99.9	144,020,451,764.0	98.4	1,720,839,810.0	1.2	17,908,570,406.0	11.8	70,008,100.0	13.4	126,650,174,860.0	86.5	5,518,590,424.0	3.6	144,556,782.0	27.6	524,081,952.0	524,081,952.0	100.0	18,082,995.0	344,745.0	0.1	523,737,207.0	99.9	474,731,114.0	49,006,093.0	9.4	2,933,363,940.0	2,906,219,586.0	15,106,757.0	466,005.0	0.5	90.4	2,885,871,840.0	89.8	91.3	2,837,244,230.0	88.3	2,647,141,796.0	82.4	2,112,541,046.0	65.7	1,011,874,290.0	1,130,396.0	31.5	231,223,095.0	7.2	46,155,569.0	1.4	41.7	44.0	42.2	523,737,207.0	524,081,952.0	151,948,385,060.0	524,081,952.0
UG1_ANA0-HG003_sent	sent	148,337,785,954.0	96.7	275.0	288.0	317.0	58.9	100.0	722,081,236.0	0.5	13,317,058,589.0	8.7	48,734,533.0	9.0	results/day/hg38/UG1_ANA0-HG003/align/sent/UG1_ANA0-HG003.cram	76,094,193,656.0	625,671,415.0	0.4	153,314,876,037.0	100.0	539,434,220.0	99.9	146,114,789,225.0	98.5	1,597,325,314.0	1.1	23,582,225,234.0	15.4	93,232,805.0	17.3	130,524,735,919.0	88.0	4,977,090,083.0	3.2	128,892,200.0	23.9	539,773,454.0	539,773,454.0	100.0	18,206,833.0	339,234.0	0.1	539,434,220.0	99.9	490,699,687.0	48,734,533.0	9.0	2,933,119,741.0	2,907,896,242.0	16,495,757.0	544,359.0	0.5	90.5	2,890,310,007.0	89.9	91.3	2,846,594,166.0	88.6	2,668,946,008.0	83.0	2,178,460,169.0	67.8	1,067,926,373.0	1,354,817.0	33.2	243,946,764.0	7.6	48,912,634.0	1.5	42.4	45.0	47.2	539,434,220.0	539,773,454.0	153,333,082,870.0	539,773,454.0
UG1_ANA0-HG004_sent	sent	150,961,635,217.0	96.7	280.0	295.0	318.0	59.0	100.0	788,214,421.0	0.5	13,754,018,504.0	8.8	49,808,649.0	9.2	results/day/hg38/UG1_ANA0-HG004/align/sent/UG1_ANA0-HG004.cram	79,521,304,750.0	672,085,708.0	0.4	156,129,231,412.0	100.0	539,143,533.0	99.9	148,597,258,626.0	98.4	1,692,290,883.0	1.1	20,255,279,374.0	13.0	78,480,750.0	14.6	131,387,179,832.0	87.0	5,167,596,195.0	3.3	141,104,944.0	26.2	539,475,395.0	539,475,395.0	100.0	16,496,205.0	331,862.0	0.1	539,143,533.0	99.9	489,334,884.0	49,808,649.0	9.2	2,913,050,147.0	2,886,684,705.0	15,498,143.0	533,676.0	0.5	89.8	2,875,915,847.0	89.5	90.6	2,862,914,738.0	89.1	2,786,706,851.0	86.7	2,297,650,172.0	71.5	1,105,006,340.0	1,162,334.0	34.4	241,066,450.0	7.5	46,715,682.0	1.5	43.0	46.0	41.4	539,143,533.0	539,475,395.0	156,145,727,617.0	539,475,395.0
UG1_ANA0-HG005_sent	sent	148,589,659,068.0	96.8	278.0	292.0	317.0	58.4	100.0	747,038,505.0	0.5	13,248,145,617.0	8.6	48,199,110.0	9.0	results/day/hg38/UG1_ANA0-HG005/align/sent/UG1_ANA0-HG005.cram	76,827,912,007.0	637,768,032.0	0.4	153,446,736,996.0	100.0	534,513,353.0	99.9	146,335,239,454.0	98.5	1,616,651,582.0	1.1	22,037,590,664.0	14.4	85,859,228.0	16.1	130,231,799,017.0	87.6	4,857,077,928.0	3.2	131,453,358.0	24.6	534,839,133.0	534,839,133.0	100.0	17,424,526.0	325,780.0	0.1	534,513,353.0	99.9	486,314,243.0	48,199,110.0	9.0	2,932,432,019.0	2,906,927,920.0	15,584,199.0	530,873.0	0.5	90.4	2,888,618,428.0	89.9	91.2	2,845,625,062.0	88.5	2,675,305,911.0	83.2	2,208,675,940.0	68.7	1,084,652,042.0	1,295,876.0	33.7	245,268,581.0	7.6	48,344,394.0	1.5	42.4	45.0	44.2	534,513,353.0	534,839,133.0	153,464,161,522.0	534,839,133.0
UG1_ANA0-HG006_sent	sent	145,572,971,605.0	96.7	283.8	301.0	320.0	60.1	100.0	805,049,248.0	0.6	13,514,997,730.0	9.0	48,462,796.0	9.4	results/day/hg38/UG1_ANA0-HG006/align/sent/UG1_ANA0-HG006.cram	78,391,191,521.0	676,665,569.0	0.5	150,547,181,709.0	100.0	512,854,285.0	99.9	143,184,377,424.0	98.4	1,711,928,612.0	1.2	16,588,966,537.0	11.0	63,301,098.0	12.3	125,589,824,908.0	86.3	4,974,210,104.0	3.3	141,753,920.0	27.6	513,219,272.0	513,219,272.0	100.0	18,469,946.0	364,987.0	0.1	512,854,285.0	99.9	464,391,489.0	48,462,796.0	9.4	2,932,721,082.0	2,905,499,578.0	14,028,034.0	429,224.0	0.4	90.4	2,883,799,852.0	89.7	91.2	2,834,718,826.0	88.2	2,636,603,420.0	82.0	2,083,146,142.0	64.8	998,502,491.0	1,136,002.0	31.1	231,273,426.0	7.2	45,672,558.0	1.4	41.4	44.0	38.9	512,854,285.0	513,219,272.0	150,565,651,655.0	513,219,272.0
UG1_ANA0-HG007_sent	sent	153,719,805,683.0	96.6	280.1	296.0	318.0	59.8	100.0	813,433,893.0	0.5	14,314,147,704.0	9.0	51,635,149.0	9.4	results/day/hg38/UG1_ANA0-HG007/align/sent/UG1_ANA0-HG007.cram	81,231,443,261.0	683,945,899.0	0.4	159,135,359,563.0	100.0	548,858,305.0	99.9	151,302,192,843.0	98.4	1,733,666,941.0	1.1	20,061,292,986.0	12.6	78,357,185.0	14.3	133,635,714,167.0	86.9	5,415,553,880.0	3.4	145,842,436.0	26.6	549,180,769.0	549,180,769.0	100.0	16,865,261.0	322,464.0	0.1	548,858,305.0	99.9	497,223,156.0	51,635,149.0	9.4	2,912,429,213.0	2,887,130,624.0	16,755,768.0	523,773.0	0.5	89.8	2,876,638,985.0	89.5	90.6	2,864,225,265.0	89.1	2,807,288,080.0	87.3	2,401,146,897.0	74.7	1,173,061,845.0	1,183,716.0	36.5	247,289,419.0	7.7	48,532,183.0	1.5	43.7	46.0	42.8	548,858,305.0	549,180,769.0	159,152,224,824.0	549,180,769.0
UG1_ANA1-HG004_sent	sent	146,855,565,175.0	96.8	275.2	288.0	316.0	57.9	100.0	700,262,110.0	0.5	12,867,089,580.0	8.5	47,378,949.0	8.9	results/day/hg38/UG1_ANA1-HG004/align/sent/UG1_ANA1-HG004.cram	74,884,141,489.0	617,980,406.0	0.4	151,622,448,609.0	100.0	533,664,317.0	99.9	144,693,188,158.0	98.5	1,544,396,611.0	1.1	24,026,795,959.0	15.8	94,179,920.0	17.6	129,414,237,717.0	88.1	4,766,883,434.0	3.1	125,696,711.0	23.6	534,047,878.0	534,047,878.0	100.0	29,780,964.0	383,561.0	0.1	533,664,317.0	99.9	486,285,368.0	47,378,949.0	8.9	2,912,814,465.0	2,886,508,050.0	15,100,348.0	562,423.0	0.5	89.8	2,875,334,930.0	89.5	90.6	2,860,416,436.0	89.0	2,745,572,585.0	85.4	2,148,784,648.0	66.9	987,809,598.0	1,205,517.0	30.7	216,598,736.0	6.7	44,672,974.0	1.4	42.0	44.0	43.3	533,664,317.0	534,047,878.0	151,652,229,573.0	534,047,878.0
UG1_ANA1-HG005_sent	sent	148,307,524,258.0	96.8	277.8	292.0	317.0	58.4	100.0	736,482,069.0	0.5	13,320,909,866.0	8.7	48,486,473.0	9.1	results/day/hg38/UG1_ANA1-HG005/align/sent/UG1_ANA1-HG005.cram	76,805,503,971.0	636,161,393.0	0.4	153,264,246,279.0	100.0	533,923,213.0	99.9	146,051,193,127.0	98.5	1,620,169,738.0	1.1	22,093,222,594.0	14.4	86,040,921.0	16.1	130,002,204,732.0	87.7	4,956,722,021.0	3.2	132,444,248.0	24.8	534,237,101.0	534,237,101.0	100.0	17,137,223.0	313,888.0	0.1	533,923,213.0	99.9	485,436,740.0	48,486,473.0	9.1	2,932,472,264.0	2,906,947,291.0	15,630,699.0	529,485.0	0.5	90.5	2,888,580,931.0	89.9	91.2	2,845,352,650.0	88.5	2,674,628,516.0	83.2	2,200,813,811.0	68.5	1,067,128,833.0	1,295,099.0	33.2	237,871,933.0	7.4	47,811,410.0	1.5	42.3	45.0	44.0	533,923,213.0	534,237,101.0	153,281,383,502.0	534,237,101.0

Task Benchmark Performances

Workflow Task Benchmark Results.

Showing ⁰/₁₂₉ rows and ²³/₂₃ columns.

combined_rule	sample	rule	s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost	rule_prefix	rule_suffix
alignstats_smmary_compile-all.	all.	alignstats_smmary_compile	3.2	0:00:03	23.6	40.2	16.5	16.9	4.8	0.4	1.9	0.1	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	2.0	0.0	alignstats_smmary_compile	NA
alignstats_summary-all.	all.	alignstats_summary	0.3	0:00:00	15.2	38.9	6.5	7.0	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	alignstats_summary	NA
final_multiqc-DAY_all.	DAY_all.	final_multiqc	17.8	0:00:17	198.0	2,621.8	203.3	205.2	1,580.3	0.7	52.7	9.4	i192-dy-all-2	10.0.1.28	192.0	0.5	r7i.48xlarge	us-west-2d	4.7	4.0	0.0	final_multiqc	NA
sent.alignstats-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.alignstats	1,041.3	0:17:21	2,236.9	4,038.3	2,254.3	2,254.6	293.2	0.1	311.9	3,248.2	i192-dy-all-1	10.0.1.119	192.0	3.1	m7i.48xlarge	us-west-2d	3.4	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.alignstats	1,650.1	0:27:30	2,304.3	4,136.7	2,315.4	2,315.7	421.5	0.2	197.2	3,254.8	i192-dy-all-5	10.0.1.155	192.0	2.0	m7i.metal-48xl	us-west-2d	2.7	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.alignstats	1,284.6	0:21:24	2,335.8	4,058.5	2,345.4	2,345.6	271.8	0.2	257.0	3,301.0	i192-dy-all-4	10.0.1.147	192.0	2.6	m7i.metal-48xl	us-west-2d	2.7	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.alignstats	1,605.7	0:26:45	2,309.6	4,033.6	2,325.0	2,325.3	654.8	0.2	208.0	3,340.6	i192-dy-all-2	10.0.1.115	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	32.0	0.3	sent	alignstats
sent.alignstats-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.alignstats	1,447.7	0:24:07	2,332.0	4,194.9	2,347.1	2,347.3	649.8	0.2	231.8	3,355.8	i192-dy-all-3	10.0.1.176	192.0	2.3	c7i.48xlarge	us-west-2d	3.1	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.alignstats	1,608.8	0:26:48	2,197.7	3,811.1	2,212.1	2,212.3	400.1	0.2	207.8	3,342.6	i192-dy-all-2	10.0.1.115	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	32.0	0.3	sent	alignstats
sent.alignstats-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.alignstats	1,529.1	0:25:29	2,276.0	4,119.1	2,287.2	2,287.4	331.8	0.2	227.3	3,475.3	i192-dy-all-3	10.0.1.176	192.0	2.3	c7i.48xlarge	us-west-2d	3.1	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.alignstats	1,538.4	0:25:38	2,315.8	4,142.1	2,333.4	2,333.6	699.9	0.2	214.2	3,295.4	i192-dy-all-2	10.0.1.115	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	32.0	0.2	sent	alignstats
sent.alignstats-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.alignstats	1,078.3	0:17:58	2,164.8	3,862.5	2,182.2	2,182.5	316.9	0.1	305.0	3,288.7	i192-dy-all-1	10.0.1.119	192.0	3.0	m7i.48xlarge	us-west-2d	3.4	32.0	0.2	sent	alignstats
sent.sentdug.1-24-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.sentdug.1-24	2,194.0	0:36:34	18,151.6	55,582.0	15,712.8	15,718.1	74,192.4	9,050.6	15,702.2	48,834.7	i192mem-dy-all-6	10.0.1.159	192.0	22.3	m7i.48xlarge	us-west-2d	3.4	192.0	2.1	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.sentdug.1-24	2,543.9	0:42:23	16,057.7	56,844.0	15,928.9	15,934.2	76,146.9	9,400.7	16,057.6	54,701.3	i192mem-dy-all-8	10.0.1.37	192.0	21.5	m7i.48xlarge	us-west-2d	3.4	192.0	2.4	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.sentdug.1-24	2,221.7	0:37:01	16,263.1	56,992.0	16,065.6	16,071.0	75,519.2	9,026.7	15,523.5	48,489.9	i192mem-dy-all-9	10.0.1.4	192.0	21.8	m7i.48xlarge	us-west-2d	3.4	192.0	2.1	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.sentdug.1-24	2,271.4	0:37:51	16,240.4	55,446.0	16,180.4	16,185.8	75,083.1	9,056.8	15,990.6	51,068.5	i192mem-dy-all-2	10.0.1.101	192.0	22.5	m7i.metal-48xl	us-west-2d	2.7	192.0	1.7	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.sentdug.1-24	2,275.0	0:37:54	16,891.1	54,904.0	17,000.3	17,005.6	72,975.4	8,903.6	15,711.4	52,456.7	i192mem-dy-all-9	10.0.1.4	192.0	23.1	m7i.48xlarge	us-west-2d	3.4	192.0	2.2	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.sentdug.1-24	2,498.4	0:41:38	17,188.4	54,748.0	15,406.6	15,412.0	76,029.9	9,595.5	16,008.7	53,353.3	i192mem-dy-all-7	10.0.1.156	192.0	21.4	m7i.48xlarge	us-west-2d	3.4	192.0	2.4	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.sentdug.1-24	2,342.4	0:39:02	16,539.4	57,116.0	15,451.3	15,455.2	77,571.7	9,492.8	15,982.0	51,053.4	i192mem-dy-all-3	10.0.1.151	192.0	21.8	m7i.metal-48xl	us-west-2d	2.7	192.0	1.8	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.sentdug.1-24	2,140.8	0:35:40	16,210.5	56,218.0	15,888.8	15,894.2	73,231.7	9,316.7	15,676.2	52,062.5	i192mem-dy-all-1	10.0.1.112	192.0	24.3	m7i.metal-48xl	us-west-2d	2.7	192.0	1.6	sent	sentdug.1-24
sent.sentdug.1-24-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.sentdug.1-24	2,289.6	0:38:09	17,228.2	54,473.0	17,325.3	17,330.7	74,160.7	9,297.3	15,822.0	49,292.6	i192mem-dy-all-6	10.0.1.159	192.0	21.5	m7i.48xlarge	us-west-2d	3.4	192.0	2.2	sent	sentdug.1-24
sent.sentdug.concat.fofn-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.sentdug.concat.fofn	0.3	0:00:00	3.1	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.sentdug.concat.fofn	0.3	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.sentdug.concat.fofn	0.3	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concat.fofn-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	sent	sentdug.concat.fofn
sent.sentdug.concordance-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.sentdug.concordance	992.5	0:16:32	78,871.4	719,838.3	78,936.6	78,937.2	2,622.8	3,759.6	86.6	495.7	i192-dy-all-5	10.0.1.155	192.0	0.5	m7i.metal-48xl	us-west-2d	2.7	96.0	0.4	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.sentdug.concordance	1,015.9	0:16:55	101,521.6	708,842.6	101,574.0	101,574.3	1,053.0	3,828.9	78.9	406.9	i192-dy-all-1	10.0.1.119	192.0	0.4	m7i.48xlarge	us-west-2d	3.4	96.0	0.5	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.sentdug.concordance	999.4	0:16:39	68,698.9	719,838.3	68,749.9	68,750.3	2,662.9	3,940.0	89.7	552.6	i192-dy-all-4	10.0.1.147	192.0	0.6	m7i.metal-48xl	us-west-2d	2.7	96.0	0.4	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.sentdug.concordance	1,068.3	0:17:48	95,340.6	242,654.0	95,282.0	95,282.6	2,499.0	3,965.1	103.7	661.7	i128-dy-c6gb256-1	10.0.1.169	128.0	0.6	c6i.32xlarge	us-west-2d	1.7	96.0	0.4	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.sentdug.concordance	988.4	0:16:28	130,803.1	1,408,094.3	130,845.0	130,854.4	2,236.5	3,752.4	74.0	396.6	i192-dy-all-2	10.0.1.28	192.0	0.4	r7i.48xlarge	us-west-2d	4.7	96.0	0.6	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.sentdug.concordance	983.0	0:16:22	123,988.6	1,408,094.3	123,996.8	124,006.2	1,914.5	3,720.2	70.3	401.7	i192-dy-all-2	10.0.1.28	192.0	0.4	r7i.48xlarge	us-west-2d	4.7	96.0	0.6	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.sentdug.concordance	985.7	0:16:25	84,205.8	719,838.3	84,226.2	84,226.6	2,681.1	3,753.6	75.6	411.3	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	96.0	0.4	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.sentdug.concordance	1,010.0	0:16:49	76,467.6	359,201.0	76,524.7	76,525.2	1,981.2	3,820.4	97.3	562.5	i192-dy-all-3	10.0.1.176	192.0	0.6	c7i.48xlarge	us-west-2d	3.1	96.0	0.4	sent	sentdug.concordance
sent.sentdug.concordance-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.sentdug.concordance	962.4	0:16:02	94,369.4	719,838.3	94,384.1	94,384.7	2,717.5	3,698.1	59.7	347.1	i192-dy-all-5	10.0.1.155	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	96.0	0.4	sent	sentdug.concordance
sent.sentdug.merge-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.sentdug.merge	23.5	0:00:23	82.2	12,782.4	91.3	91.4	313.7	329.5	193.6	52.7	i192-dy-all-4	10.0.1.147	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.sentdug.merge	24.9	0:00:24	84.7	12,590.4	87.7	88.0	1.7	323.6	183.2	49.6	i192-dy-all-1	10.0.1.119	192.0	2.0	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.sentdug.merge	23.1	0:00:23	80.7	12,078.4	85.8	87.2	314.7	335.9	201.0	53.5	i192-dy-all-4	10.0.1.147	192.0	2.3	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.sentdug.merge	24.5	0:00:24	78.6	11,630.4	87.3	87.5	302.5	329.6	187.9	52.1	i192-dy-all-1	10.0.1.119	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.sentdug.merge	23.5	0:00:23	80.7	12,398.4	88.7	89.0	333.7	329.9	195.0	52.5	i192-dy-all-5	10.0.1.155	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.sentdug.merge	23.7	0:00:23	86.2	12,590.4	88.4	88.6	0.0	340.1	194.4	53.4	i192-dy-all-5	10.0.1.155	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.sentdug.merge	24.5	0:00:24	78.7	13,166.4	88.4	88.6	1.7	321.6	184.0	50.6	i192-dy-all-1	10.0.1.119	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.sentdug.merge	23.9	0:00:23	80.6	12,526.4	89.4	89.6	5.9	327.6	196.2	52.8	i192-dy-all-3	10.0.1.176	192.0	2.2	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	sent	sentdug.merge
sent.sentdug.merge-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.sentdug.merge	24.2	0:00:24	80.2	13,102.4	87.8	88.0	294.7	321.6	187.6	52.1	i192-dy-all-1	10.0.1.119	192.0	2.2	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	sent	sentdug.merge
sent.sentdug.peddy-UG1_ANA0-HG001	UG1_ANA0-HG001	sent.sentdug.peddy	5.0	0:00:05	1,575.8	39,079.7	458.6	526.5	149.8	0.0	48.6	0.0	i192-dy-all-4	10.0.1.147	192.0	0.0	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG002	UG1_ANA0-HG002	sent.sentdug.peddy	2.8	0:00:02	1,571.2	39,071.2	455.1	523.5	0.0	0.0	79.2	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG003	UG1_ANA0-HG003	sent.sentdug.peddy	4.3	0:00:04	76.5	2,359.6	77.2	77.8	179.1	0.0	52.8	0.0	i192-dy-all-5	10.0.1.155	192.0	0.0	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG004	UG1_ANA0-HG004	sent.sentdug.peddy	2.7	0:00:02	105.0	2,487.8	101.6	102.2	0.0	0.0	81.6	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG005	UG1_ANA0-HG005	sent.sentdug.peddy	3.1	0:00:03	1,576.6	39,076.1	443.0	518.9	87.0	0.0	73.4	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG006	UG1_ANA0-HG006	sent.sentdug.peddy	3.0	0:00:02	1,588.8	39,076.2	461.1	529.1	58.5	0.0	73.8	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA0-HG007	UG1_ANA0-HG007	sent.sentdug.peddy	2.8	0:00:02	1,578.0	39,078.5	459.1	527.1	65.7	0.0	79.7	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA1-HG004	UG1_ANA1-HG004	sent.sentdug.peddy	5.5	0:00:05	81.0	2,355.0	76.7	77.2	89.6	0.0	42.9	0.0	i192-dy-all-3	10.0.1.176	192.0	0.0	c7i.48xlarge	us-west-2d	3.1	16.0	0.0	sent	sentdug.peddy
sent.sentdug.peddy-UG1_ANA1-HG005	UG1_ANA1-HG005	sent.sentdug.peddy	3.1	0:00:03	1,575.0	39,076.2	443.1	519.0	87.1	0.0	72.6	0.0	i192-dy-all-1	10.0.1.119	192.0	0.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	sent	sentdug.peddy
ug.mosdepth-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.mosdepth	1,040.8	0:17:20	2,338.2	34,782.9	2,345.9	2,346.2	23.8	4,352.2	48.5	504.9	i192-dy-all-1	10.0.1.119	192.0	0.5	m7i.48xlarge	us-west-2d	3.4	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.mosdepth	1,629.1	0:27:09	2,305.8	34,465.1	2,309.1	2,309.5	717.7	4,252.7	31.2	509.0	i192-dy-all-2	10.0.1.115	192.0	0.3	m7i.48xlarge	us-west-2d	3.4	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.mosdepth	1,476.0	0:24:35	2,319.2	3,242.3	2,322.4	2,322.8	363.7	4,379.4	34.9	513.2	i192-dy-all-3	10.0.1.176	192.0	0.3	c7i.48xlarge	us-west-2d	3.1	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.mosdepth	1,505.6	0:25:05	2,334.4	3,256.4	2,337.9	2,338.2	814.2	4,395.7	35.9	540.1	i192-dy-all-3	10.0.1.176	192.0	0.4	c7i.48xlarge	us-west-2d	3.1	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.mosdepth	1,285.0	0:21:25	2,333.5	34,390.6	2,338.3	2,338.7	291.3	4,364.4	39.2	504.5	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.mosdepth	1,102.3	0:18:22	2,327.4	3,118.7	2,333.6	2,334.1	358.5	4,240.0	47.2	519.3	i192-dy-all-1	10.0.1.119	192.0	0.5	m7i.48xlarge	us-west-2d	3.4	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.mosdepth	1,645.8	0:27:25	2,335.1	34,335.1	2,341.8	2,342.0	597.5	4,446.4	32.1	528.1	i192-dy-all-2	10.0.1.115	192.0	0.3	m7i.48xlarge	us-west-2d	3.4	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.mosdepth	1,229.7	0:20:29	2,342.7	34,390.6	2,350.7	2,351.0	336.0	4,368.4	40.5	498.9	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.1	ug	mosdepth
ug.mosdepth-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.mosdepth	1,080.4	0:18:00	2,338.3	34,455.5	2,346.3	2,346.6	180.9	4,346.6	47.1	509.3	i192-dy-all-1	10.0.1.119	192.0	0.5	m7i.48xlarge	us-west-2d	3.4	16.0	0.1	ug	mosdepth
ug.mrkdup.sort.picard-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.mrkdup.sort.picard	184.7	0:03:04	1,494.7	33,834.5	1,485.5	1,495.2	685.7	1.3	60.2	111.0	i192-dy-all-5	10.0.1.155	192.0	0.6	m7i.metal-48xl	us-west-2d	2.7	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.mrkdup.sort.picard	162.3	0:02:42	1,479.0	33,899.5	1,477.7	1,484.3	800.0	1.2	61.9	108.9	i192-dy-all-4	10.0.1.147	192.0	0.7	m7i.metal-48xl	us-west-2d	2.7	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.mrkdup.sort.picard	184.8	0:03:04	1,498.0	33,834.5	1,496.6	1,506.2	342.2	1.3	59.1	109.1	i192-dy-all-5	10.0.1.155	192.0	0.6	m7i.metal-48xl	us-west-2d	2.7	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.mrkdup.sort.picard	164.5	0:02:44	1,505.3	33,704.5	1,519.9	1,520.7	686.5	1.1	59.2	106.3	i192-dy-all-3	10.0.1.176	192.0	0.6	c7i.48xlarge	us-west-2d	3.1	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.mrkdup.sort.picard	169.9	0:02:49	1,512.3	33,899.5	1,523.0	1,523.9	825.3	1.0	79.3	142.5	i192-dy-all-2	10.0.1.115	192.0	0.8	m7i.48xlarge	us-west-2d	3.4	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.mrkdup.sort.picard	162.3	0:02:42	1,494.7	33,899.5	1,489.6	1,496.1	308.8	1.2	58.8	103.9	i192-dy-all-4	10.0.1.147	192.0	0.6	m7i.metal-48xl	us-west-2d	2.7	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.mrkdup.sort.picard	162.5	0:02:42	1,514.9	33,834.5	1,514.7	1,524.3	719.0	1.1	61.5	107.5	i192-dy-all-1	10.0.1.119	192.0	0.7	m7i.48xlarge	us-west-2d	3.4	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.mrkdup.sort.picard	162.4	0:02:42	1,508.8	33,834.5	1,510.1	1,519.8	376.8	1.2	60.7	106.3	i192-dy-all-1	10.0.1.119	192.0	0.7	m7i.48xlarge	us-west-2d	3.4	32.0	0.0	ug	mrkdup.sort.picard
ug.mrkdup.sort.picard-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.mrkdup.sort.picard	162.3	0:02:42	1,489.3	33,899.5	1,489.4	1,495.9	335.8	1.1	64.4	112.7	i192-dy-all-4	10.0.1.147	192.0	0.7	m7i.metal-48xl	us-west-2d	2.7	32.0	0.0	ug	mrkdup.sort.picard
ug.sentdug.1-24-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.sentdug.1-24	2,056.0	0:34:16	18,434.7	55,849.0	16,440.8	16,446.2	73,879.5	9,284.1	15,313.2	49,033.0	i192mem-dy-all-3	10.0.1.151	192.0	23.8	m7i.metal-48xl	us-west-2d	2.7	192.0	1.6	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.sentdug.1-24	2,394.5	0:39:54	15,978.9	57,216.0	15,707.8	15,712.9	77,784.8	9,586.7	15,712.1	49,844.9	i192mem-dy-all-2	10.0.1.101	192.0	20.8	m7i.metal-48xl	us-west-2d	2.7	192.0	1.8	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.sentdug.1-24	2,239.9	0:37:19	16,609.5	56,476.0	15,473.1	15,477.1	76,238.6	8,380.9	15,439.7	50,096.0	i192mem-dy-all-1	10.0.1.112	192.0	22.4	m7i.metal-48xl	us-west-2d	2.7	192.0	1.7	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.sentdug.1-24	2,400.3	0:40:00	17,467.7	55,337.0	17,465.8	17,471.1	77,737.1	9,569.9	15,832.0	50,011.7	i192mem-dy-all-8	10.0.1.37	192.0	20.8	m7i.48xlarge	us-west-2d	3.4	192.0	2.3	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.sentdug.1-24	2,159.6	0:35:59	16,694.9	55,518.0	16,712.8	16,718.1	74,736.4	8,732.7	15,547.1	47,476.4	i192mem-dy-all-5	10.0.1.126	192.0	22.0	m7i.metal-48xl	us-west-2d	2.7	192.0	1.6	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.sentdug.1-24	2,540.6	0:42:20	15,261.0	54,226.0	15,188.5	15,193.8	76,902.5	9,078.2	15,883.0	49,879.4	i192mem-dy-all-4	10.0.1.200	192.0	19.6	m7i.metal-48xl	us-west-2d	2.7	192.0	1.9	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.sentdug.1-24	2,459.5	0:40:59	16,992.0	56,898.0	15,578.3	15,583.6	79,407.4	9,492.8	15,882.9	49,975.5	i192mem-dy-all-10	10.0.1.32	192.0	20.3	m7i.48xlarge	us-west-2d	3.4	192.0	2.3	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.sentdug.1-24	2,099.8	0:34:59	16,022.9	56,172.0	16,000.2	16,005.6	73,631.5	9,100.3	15,399.5	51,728.6	i192mem-dy-all-7	10.0.1.156	192.0	24.6	m7i.48xlarge	us-west-2d	3.4	192.0	2.0	ug	sentdug.1-24
ug.sentdug.1-24-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.sentdug.1-24	2,171.4	0:36:11	16,335.7	55,754.0	16,309.7	16,315.0	76,759.8	8,796.7	15,467.0	50,133.5	i192mem-dy-all-5	10.0.1.126	192.0	23.1	m7i.metal-48xl	us-west-2d	2.7	192.0	1.6	ug	sentdug.1-24
ug.sentdug.bcfstat-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.sentdug.bcfstat	41.9	0:00:41	31.1	2,514.2	25.8	27.2	1,177.6	0.0	39.0	18.1	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.sentdug.bcfstat	51.4	0:00:51	33.0	2,710.4	28.7	28.9	2,078.0	0.0	94.5	49.5	i192-dy-all-1	10.0.1.119	192.0	1.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.sentdug.bcfstat	45.8	0:00:45	31.2	2,514.2	28.3	28.6	2,495.3	0.5	104.7	49.8	i192-dy-all-5	10.0.1.155	192.0	1.1	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.sentdug.bcfstat	39.1	0:00:39	31.1	2,578.2	25.8	27.2	264.7	0.0	42.1	18.3	i192-dy-all-1	10.0.1.119	192.0	0.5	m7i.48xlarge	us-west-2d	3.4	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.sentdug.bcfstat	42.6	0:00:42	31.3	2,706.1	28.2	28.4	1,265.0	0.0	38.8	17.9	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.sentdug.bcfstat	42.4	0:00:42	29.8	2,514.1	28.3	28.5	264.7	0.0	38.0	18.0	i192-dy-all-5	10.0.1.155	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.sentdug.bcfstat	38.4	0:00:38	31.2	2,578.1	28.1	28.2	264.7	0.0	43.0	18.3	i192-dy-all-3	10.0.1.176	192.0	0.5	c7i.48xlarge	us-west-2d	3.1	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.sentdug.bcfstat	43.7	0:00:43	31.1	2,962.1	28.3	28.4	1,274.7	0.0	37.4	18.1	i192-dy-all-3	10.0.1.176	192.0	0.4	c7i.48xlarge	us-west-2d	3.1	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.bcfstat-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.sentdug.bcfstat	44.0	0:00:44	29.8	2,578.1	28.0	28.2	264.7	0.0	37.0	18.1	i192-dy-all-4	10.0.1.147	192.0	0.4	m7i.metal-48xl	us-west-2d	2.7	16.0	0.0	ug	sentdug.bcfstat
ug.sentdug.concat.fofn-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.sentdug.concat.fofn	0.3	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.concat.fofn-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.sentdug.concat.fofn	0.4	0:00:00	3.2	7.7	0.1	0.3	0.0	0.0	0.0	0.0	ip-10-0-0-110	44.238.210.144	8.0	0.0	r7i.2xlarge	us-west-2d	0.2	1.0	0.0	ug	sentdug.concat.fofn
ug.sentdug.merge-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.sentdug.merge	23.5	0:00:23	79.0	12,974.4	89.5	89.6	6.0	333.5	196.9	53.3	i192-dy-all-3	10.0.1.176	192.0	2.3	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.sentdug.merge	23.7	0:00:23	77.8	12,334.4	88.2	88.5	0.0	339.8	194.4	53.3	i192-dy-all-5	10.0.1.155	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.sentdug.merge	23.5	0:00:23	79.2	12,590.4	88.3	88.5	0.0	329.8	195.4	53.1	i192-dy-all-3	10.0.1.176	192.0	2.3	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.sentdug.merge	24.0	0:00:24	80.1	12,590.4	88.1	88.2	0.0	335.7	193.1	53.5	i192-dy-all-3	10.0.1.176	192.0	2.2	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.sentdug.merge	24.4	0:00:24	82.0	12,078.4	88.8	89.0	1.6	317.7	184.7	51.9	i192-dy-all-1	10.0.1.119	192.0	2.1	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.sentdug.merge	24.2	0:00:24	84.7	13,422.4	87.4	87.6	0.0	330.0	189.1	52.9	i192-dy-all-1	10.0.1.119	192.0	2.2	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.sentdug.merge	24.5	0:00:24	83.1	13,294.4	86.0	87.0	0.0	327.7	185.8	52.6	i192-dy-all-1	10.0.1.119	192.0	2.2	m7i.48xlarge	us-west-2d	3.4	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.sentdug.merge	23.9	0:00:23	83.3	12,078.4	86.1	87.5	1.7	327.6	190.8	52.6	i192-dy-all-4	10.0.1.147	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.merge
ug.sentdug.merge-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.sentdug.merge	23.7	0:00:23	84.7	12,270.4	89.0	89.3	6.0	323.7	196.7	52.3	i192-dy-all-5	10.0.1.155	192.0	2.2	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.merge
ug.sentdug.rtgvcfstats-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.sentdug.rtgvcfstats	32.5	0:00:32	2,720.3	355,637.8	2,745.1	2,745.3	327.0	0.1	66.0	21.9	i192-dy-all-3	10.0.1.176	192.0	0.7	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.sentdug.rtgvcfstats	29.4	0:00:29	2,574.6	716,204.7	2,597.8	2,598.6	267.0	0.1	70.1	22.4	i192-dy-all-5	10.0.1.155	192.0	0.8	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.sentdug.rtgvcfstats	31.2	0:00:31	2,673.7	355,640.2	2,701.9	2,702.2	267.0	0.1	66.7	22.5	i192-dy-all-3	10.0.1.176	192.0	0.7	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.sentdug.rtgvcfstats	32.2	0:00:32	2,627.7	355,641.3	2,655.9	2,656.1	267.0	0.1	64.6	22.4	i192-dy-all-3	10.0.1.176	192.0	0.7	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.sentdug.rtgvcfstats	32.8	0:00:32	2,745.6	355,637.8	2,772.4	2,772.8	326.9	0.1	63.3	20.8	i192-dy-all-3	10.0.1.176	192.0	0.6	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.sentdug.rtgvcfstats	32.7	0:00:32	2,732.8	355,641.3	2,764.3	2,764.6	267.0	0.1	63.5	22.4	i192-dy-all-3	10.0.1.176	192.0	0.7	c7i.48xlarge	us-west-2d	3.1	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.sentdug.rtgvcfstats	29.2	0:00:29	3,293.9	716,269.7	3,315.5	3,316.4	267.0	0.1	72.2	22.9	i192-dy-all-5	10.0.1.155	192.0	0.8	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.sentdug.rtgvcfstats	30.5	0:00:30	2,557.2	716,206.5	2,586.7	2,587.0	420.8	0.1	74.3	22.7	i192-dy-all-4	10.0.1.147	192.0	0.7	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.rtgvcfstats
ug.sentdug.rtgvcfstats-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.sentdug.rtgvcfstats	30.2	0:00:30	2,618.0	716,204.7	2,639.8	2,640.2	326.9	0.1	70.2	21.5	i192-dy-all-5	10.0.1.155	192.0	0.7	m7i.metal-48xl	us-west-2d	2.7	64.0	0.0	ug	sentdug.rtgvcfstats
ug.vb2-UG1_ANA0-HG001	UG1_ANA0-HG001	ug.vb2	3,464.9	0:57:44	535.8	560.8	529.7	530.0	59,677.6	11.0	95.7	3,315.2	i192-dy-all-3	10.0.1.176	192.0	1.0	c7i.48xlarge	us-west-2d	3.1	16.0	0.2	ug	vb2
ug.vb2-UG1_ANA0-HG002	UG1_ANA0-HG002	ug.vb2	3,728.3	1:02:08	535.3	559.1	528.3	528.7	63,567.0	9.3	97.4	3,630.2	i192-dy-all-3	10.0.1.176	192.0	1.0	c7i.48xlarge	us-west-2d	3.1	16.0	0.3	ug	vb2
ug.vb2-UG1_ANA0-HG003	UG1_ANA0-HG003	ug.vb2	3,885.6	1:04:45	534.8	558.7	530.2	530.9	45,645.7	7.3	84.8	3,296.8	i192-dy-all-3	10.0.1.176	192.0	0.8	c7i.48xlarge	us-west-2d	3.1	16.0	0.3	ug	vb2
ug.vb2-UG1_ANA0-HG004	UG1_ANA0-HG004	ug.vb2	3,666.7	1:01:06	532.2	555.3	524.6	525.3	62,914.2	6.2	98.8	3,622.3	i192-dy-all-4	10.0.1.147	192.0	1.0	m7i.metal-48xl	us-west-2d	2.7	16.0	0.2	ug	vb2
ug.vb2-UG1_ANA0-HG005	UG1_ANA0-HG005	ug.vb2	3,451.9	0:57:31	553.8	576.0	548.0	549.0	62,028.7	6.6	98.9	3,413.3	i192-dy-all-1	10.0.1.119	192.0	1.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.3	ug	vb2
ug.vb2-UG1_ANA0-HG006	UG1_ANA0-HG006	ug.vb2	3,729.1	1:02:09	533.4	556.7	528.1	529.3	27,739.8	10.2	94.2	3,513.1	i192-dy-all-2	10.0.1.115	192.0	0.9	m7i.48xlarge	us-west-2d	3.4	16.0	0.3	ug	vb2
ug.vb2-UG1_ANA0-HG007	UG1_ANA0-HG007	ug.vb2	4,200.7	1:10:00	534.0	559.5	527.0	527.7	49,815.1	10.2	86.0	3,614.0	i192-dy-all-3	10.0.1.176	192.0	0.9	c7i.48xlarge	us-west-2d	3.1	16.0	0.3	ug	vb2
ug.vb2-UG1_ANA1-HG004	UG1_ANA1-HG004	ug.vb2	3,243.0	0:54:03	544.3	568.1	539.1	539.9	15,498.5	7.5	104.0	3,371.0	i192-dy-all-4	10.0.1.147	192.0	1.0	m7i.metal-48xl	us-west-2d	2.7	16.0	0.2	ug	vb2
ug.vb2-UG1_ANA1-HG005	UG1_ANA1-HG005	ug.vb2	3,517.0	0:58:37	539.6	560.0	532.0	533.2	61,964.9	8.5	97.9	3,443.8	i192-dy-all-2	10.0.1.115	192.0	1.0	m7i.48xlarge	us-west-2d	3.4	16.0	0.3	ug	vb2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: rules_benchmark_data-plot_table

Sort	Column	Description	ID
\|\|	sample	sample	`sample`
\|\|	rule	rule	`rule`
\|\|	s	s	`s`
\|\|	h:m:s	h:m:s	`h_m_s`
\|\|	max_rss	max_rss	`max_rss`
\|\|	max_vms	max_vms	`max_vms`
\|\|	max_uss	max_uss	`max_uss`
\|\|	max_pss	max_pss	`max_pss`
\|\|	io_in	io_in	`io_in`
\|\|	io_out	io_out	`io_out`
\|\|	mean_load	mean_load	`mean_load`
\|\|	cpu_time	cpu_time	`cpu_time`
\|\|	hostname	hostname	`hostname`
\|\|	ip	ip	`ip`
\|\|	nproc	nproc	`nproc`
\|\|	cpu_efficiency	cpu_efficiency	`cpu_efficiency`
\|\|	instance_type	instance_type	`instance_type`
\|\|	region_az	region_az	`region_az`
\|\|	spot_cost	spot_cost	`spot_cost`
\|\|	snakemake_threads	snakemake_threads	`snakemake_threads`
\|\|	task_cost	task_cost	`task_cost`
\|\|	rule_prefix	rule_prefix	`rule_prefix`
\|\|	rule_suffix	rule_suffix	`rule_suffix`

Controls Concordance Report

Concordance Stats For The GIAB HC Regions For This Sample.

Showing ⁰/₈₁ rows and ¹⁹/₁₉ columns.

mqc_id	SNPClass	Sample	TgtRegionSize	TN	FN	TP	FP	Fscore	Sensitivity-Recall	Specificity	FDR	PPV	Precision	AltId	CmpFootprint	AllVarMeanDP	CovBin	Aligner	SNVCaller
UG1_ANA0-HG001_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,508,571,586.0	95,653.0	3,624,550.0	18,754.0	1.0	1.0	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,063,907.0	40,295.0	187,587.0	2,093.0	0.9	0.8	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,291,789.0	0.0	0.0	16.0			1.0	1.0	0.0	0.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,081,120.0	21,624.0	189,045.0	6,227.0	0.9	0.9	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,291,789.0	0.0	0.0	1.0			1.0	1.0	0.0	0.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,262,490.0	8,736.0	20,563.0	725.0	0.8	0.7	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,512,291,515.0	75.0	199.0	2.0	0.8	0.7	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,510,084,745.0	15,473.0	2,191,571.0	4,603.0	1.0	1.0	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG001_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG001_DBC0_0	2,512,291,789.0	2,511,246,754.0	9,450.0	1,035,585.0	5,087.0	1.0	1.0	1.0	0.0	1.0	1.0	HG001	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,538,354,347.0	128,077.0	3,760,419.0	24,165.0	1.0	1.0	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,541,988,694.0	51,691.0	202,458.0	2,673.0	0.9	0.8	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,542,242,839.0	1.0	3.0	12.0	0.3	0.8	1.0	0.8	0.2	0.2	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,542,006,980.0	30,909.0	204,954.0	8,292.0	0.9	0.9	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,542,242,828.0	14.0	1.0	1.0	0.1	0.1	1.0	0.5	0.5	0.5	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,542,207,415.0	10,704.0	24,724.0	859.0	0.8	0.7	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,542,242,376.0	28.0	439.0	0.0	1.0	0.9	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,539,964,440.0	21,679.0	2,256,724.0	5,767.0	1.0	1.0	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG002_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG002_DBC0_0	2,542,242,843.0	2,541,158,676.0	13,051.0	1,071,116.0	6,561.0	1.0	1.0	1.0	0.0	1.0	1.0	HG002	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,524,701,018.0	115,389.0	3,714,695.0	18,757.0	1.0	1.0	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,287,332.0	46,014.0	197,756.0	2,212.0	0.9	0.8	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,531,102.0	0.0	0.0	10.0			1.0	1.0	0.0	0.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,304,126.0	26,804.0	200,172.0	6,924.0	0.9	0.9	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,531,101.0	0.0	1.0	1.0	0.7	1.0	1.0	0.5	0.5	0.5	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,497,446.0	9,824.0	23,832.0	797.0	0.8	0.7	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,528,530,642.0	21.0	439.0	3.0	1.0	1.0	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,526,277,164.0	20,563.0	2,233,375.0	4,337.0	1.0	1.0	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG003_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG003_DBC0_0	2,528,531,102.0	2,527,459,819.0	12,163.0	1,059,120.0	4,473.0	1.0	1.0	1.0	0.0	1.0	1.0	HG003	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,520,632,384.0	120,966.0	3,734,181.0	20,888.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,240,996.0	48,993.0	197,542.0	2,429.0	0.9	0.8	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,487,531.0	0.0	0.0	7.0			1.0	1.0	0.0	0.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,258,198.0	28,974.0	200,359.0	7,252.0	0.9	0.9	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,487,531.0	0.0	0.0	1.0			1.0	1.0	0.0	0.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,452,905.0	10,856.0	23,770.0	936.0	0.8	0.7	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,524,487,105.0	23.0	403.0	6.0	1.0	0.9	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,522,221,328.0	20,128.0	2,246,075.0	4,837.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG004_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG004_DBC0_0	2,524,487,531.0	2,523,409,507.0	11,992.0	1,066,032.0	5,420.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,795,698,842.0	15,517.0	3,611,284.0	302,361.0	1.0	1.0	1.0	0.1	0.9	0.9	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,153,729.0	4,481.0	167,433.0	34,982.0	0.9	1.0	1.0	0.2	0.8	0.8	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,325,611.0	32.0	0.0	505.0		0.0	1.0	1.0	0.0	0.0	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,165,190.0	1,802.0	158,651.0	29,056.0	0.9	1.0	1.0	0.2	0.8	0.8	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,325,629.0	13.0	1.0	306.0	0.0	0.1	1.0	1.0	0.0	0.0	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,309,075.0	168.0	16,400.0	2,931.0	0.9	1.0	1.0	0.2	0.8	0.8	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,799,324,815.0	12.0	816.0	384.0	0.8	1.0	1.0	0.3	0.7	0.7	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,797,095,628.0	5,664.0	2,224,351.0	150,522.0	1.0	1.0	1.0	0.1	0.9	0.9	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG005_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG005_DBC0_0	2,799,325,643.0	2,798,278,666.0	3,345.0	1,043,632.0	83,675.0	1.0	1.0	1.0	0.1	0.9	0.9	HG005	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,795,731,912.0	18,013.0	3,575,718.0	327,244.0	1.0	1.0	1.0	0.1	0.9	0.9	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,164,138.0	5,391.0	156,114.0	45,233.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,325,619.0	23.0	1.0	559.0	0.0	0.0	1.0	1.0	0.0	0.0	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,170,836.0	2,234.0	152,573.0	35,826.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,325,623.0	10.0	10.0	306.0	0.1	0.5	1.0	1.0	0.0	0.0	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,310,550.0	185.0	14,908.0	4,879.0	0.9	1.0	1.0	0.2	0.8	0.8	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,799,324,928.0	13.0	702.0	495.0	0.7	1.0	1.0	0.4	0.6	0.6	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,797,105,318.0	6,341.0	2,213,984.0	152,820.0	1.0	1.0	1.0	0.1	0.9	0.9	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG006_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG006_DBC0_0	2,799,325,643.0	2,798,284,401.0	3,816.0	1,037,426.0	87,126.0	1.0	1.0	1.0	0.1	0.9	0.9	HG006	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-All	All	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,795,715,196.0	17,216.0	3,593,231.0	366,824.0	0.9	1.0	1.0	0.1	0.9	0.9	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,164,035.0	4,801.0	156,807.0	48,036.0	0.9	1.0	1.0	0.2	0.8	0.8	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,325,614.0	26.0	3.0	552.0	0.0	0.1	1.0	1.0	0.0	0.0	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,170,788.0	2,000.0	152,855.0	37,483.0	0.9	1.0	1.0	0.2	0.8	0.8	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,325,623.0	16.0	4.0	313.0	0.0	0.2	1.0	1.0	0.0	0.0	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,310,777.0	161.0	14,705.0	5,592.0	0.8	1.0	1.0	0.3	0.7	0.7	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,799,324,892.0	6.0	745.0	511.0	0.7	1.0	1.0	0.4	0.6	0.6	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,797,094,100.0	6,526.0	2,225,017.0	174,384.0	1.0	1.0	1.0	0.1	0.9	0.9	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA0-HG007_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA0-HG007_DBC0_0	2,799,325,643.0	2,798,278,868.0	3,680.0	1,043,095.0	99,953.0	1.0	1.0	1.0	0.1	0.9	0.9	HG007	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-All	All	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,520,632,315.0	117,924.0	3,737,292.0	18,508.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,241,014.0	47,672.0	198,845.0	2,142.0	0.9	0.8	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,487,531.0	0.0	0.0	19.0			1.0	1.0	0.0	0.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,258,321.0	27,628.0	201,582.0	7,203.0	0.9	0.9	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,487,531.0	0.0	0.0	0.0			1.0				HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,452,792.0	10,669.0	24,070.0	893.0	0.8	0.7	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,524,487,109.0	24.0	398.0	2.0	1.0	0.9	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,522,221,271.0	20,026.0	2,246,234.0	4,104.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG004_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA1-HG004_DBC0_0	2,524,487,531.0	2,523,409,463.0	11,905.0	1,066,163.0	4,145.0	1.0	1.0	1.0	0.0	1.0	1.0	HG004	ultima	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-All	All	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,500,038,436.0	63,679.0	3,626,696.0	14,813.0	1.0	1.0	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-DEL_50	DEL_50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,525,298.0	20,525.0	182,988.0	1,527.0	0.9	0.9	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-DEL_gt50	DEL_gt50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,728,811.0	0.0	0.0	11.0			1.0	1.0	0.0	0.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-INS_50	INS_50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,536,751.0	11,251.0	180,809.0	4,146.0	1.0	0.9	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-INS_gt50	INS_gt50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,728,811.0	0.0	0.0	2.0			1.0	1.0	0.0	0.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-Indel_50	Indel_50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,707,479.0	2,452.0	18,880.0	230.0	0.9	0.9	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-Indel_gt50	Indel_gt50	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,503,728,462.0	17.0	332.0	3.0	1.0	1.0	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-SNPts	SNPts	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,501,508,135.0	18,569.0	2,202,107.0	4,300.0	1.0	1.0	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug
UG1_ANA1-HG005_DBC0_0-sent-sentdug-SNPtv	SNPtv	UG1_ANA1-HG005_DBC0_0	2,503,728,811.0	2,502,676,366.0	10,865.0	1,041,580.0	4,594.0	1.0	1.0	1.0	0.0	1.0	1.0	HG005	wgsHC	-1.0	-2.0	sent	sentdug

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: giab_concordance-plot_table

Sort	Column	Description	ID
\|\|	SNPClass	SNPClass	`SNPClass`
\|\|	Sample	Sample	`Sample`
\|\|	TgtRegionSize	TgtRegionSize	`TgtRegionSize`
\|\|	TN	TN	`TN`
\|\|	FN	FN	`FN`
\|\|	TP	TP	`TP`
\|\|	FP	FP	`FP`
\|\|	Fscore	Fscore	`Fscore`
\|\|	Sensitivity-Recall	Sensitivity-Recall	`Sensitivity_Recall`
\|\|	Specificity	Specificity	`Specificity`
\|\|	FDR	FDR	`FDR`
\|\|	PPV	PPV	`PPV`
\|\|	Precision	Precision	`Precision`
\|\|	AltId	AltId	`AltId`
\|\|	CmpFootprint	CmpFootprint	`CmpFootprint`
\|\|	AllVarMeanDP	AllVarMeanDP	`AllVarMeanDP`
\|\|	CovBin	CovBin	`CovBin`
\|\|	Aligner	Aligner	`Aligner`
\|\|	SNVCaller	SNVCaller	`SNVCaller`

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Software	Version
Bcftools	`1.21`

v1.25.2

Singleton Multiqc Report

MultiQC Toolbox

Highlight Samples

Rename Samples

Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

Tool Citations

About MultiQC

Singleton Multiqc Report

General Statistics

VerifyBAMID

Peddy

PCA Plot

Het Check

Sex Check

Picard

Alignment Summary

Mean read length

Base Distribution

GC Coverage Bias

Mean Base Quality by Cycle

Base Quality Distribution

Mosdepth

Cumulative coverage distribution

Average coverage per contig

XY coverage

Bcftools

Variant Substitution Types

Variant Quality

Indel Distribution

Variant depths

Alignstats Data

Task Benchmark Performances

Controls Concordance Report

Software Versions

Toggle navigation v1.25.2

Singleton Multiqc Report

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

Tool Citations

About MultiQC

Singleton Multiqc Report

General Statistics

General Statistics: Columns

VerifyBAMID

VerifyBAMID: Results: Columns

Peddy

PCA Plot

Het Check Help

Sex Check Help

Picard

Alignment Summary

Mean read length

Base Distribution

GC Coverage Bias

Mean Base Quality by Cycle Help

Base Quality Distribution

Mosdepth

Cumulative coverage distribution Help

Average coverage per contig

XY coverage

Bcftools

Variant Substitution Types

Variant Quality

Indel Distribution

Variant depths

Alignstats Data

Task Benchmark Performances

Task Benchmark Performances: Columns

Controls Concordance Report

Controls Concordance Report: Columns

Software Versions

v1.25.2

Highlight Samples

Rename Samples

Show / Hide Samples

Het Check

Sex Check

Mean Base Quality by Cycle

Cumulative coverage distribution